Preheat over to 400°F. LIne a muffin pan with paper cups or lightly spray/grease with oil.
Combine the flours, salt, baking powder, baking soda, and spices in a large bowl and whisk together until combined. Set aside.
Add the oil, eggs, and brown sugar to a large bowl and whisk together. Add in the pumpkin puree and mix once more until smooth.
Pour the dry into the wet and add the chocolate chips. Mix until just combined.
Transfer the batter to your lined or greased muffin tin filling each cup about 3/4 the way up.
Bake at 400° for 18-20 minutes until a skewer inserted in the center comes out clean. Cool in the muffin pan for 10 minutes. Then transfer to a wire rack to cool completely.
Notes
*Calorie count is an estimate
Keyword healthy pumpkin muffins, healthy pumpkin muffins with chocolate chips